I'm no naval aviator but here is what i know.
99 is directed to all aircraft
Button 3 is "Strike". Another carrier ATC freq.
616 would be a helo. Possibly the "plane guard" rescue helo. Starboad D would be the holding patter the helo would be in on the right side of the ship. The Bolter/Waveoff pattern for the jets is on the left side.
206 is one of the recovery tankers for jets landing if they need some gas and holds over the carrier. A recovery usually starts right after a launch is complete.
106 is another recovery tanker. I think the fule state of 13 over 5.5 means that it has 13 thousand pounds of gas available to give and 5.5 thousand it needs to keep for itself or it could be the other way around.
When 103 launches it joins with 206 (recovery tanker) for a package check. This means 103 will get some gas from 206 to ensure that 206 can actually give fuel.http://en.wikipedia.org/wiki/File:F-18_Buddy_Refueling.jpg
Beaver is the callsign for FACSFAC San diego that controlls the W-291 area.
Here is the Status of the Navy webpage:http://www.navy.mil/navydata/navy_legacy_hr.asp?id=146
Here is a pic from September 1st of the Carl Vinson http://www.navy.mil/view_single.asp?id=91264
I have some more navy carrier freqs that i have hear active if you want them.