Firstly... WELCOME TO LIVE ATC!
Hm, nope... what you scan is what you get. As far as I know, the scanner simply tunes in to the frequency and spits the audio out. Though I could see how the scanner could easy "add" a tone (of any sort) to the audio, I don't think it happens.
It's a cool idea, but I don't think it's done anywhere, and the only ways to identify what you're listening to is to look at the LCD screen, or to listen to the content. (For example, "Clear to land...." would be a Tower frequency.)